Adobe Premiere Pro

FAQ:Why are extra cue points/markers appearing in my export?

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Some of my source footage was created in After Effects. It turns out that there were a couple of cue points in the AE comp that had similar names to the cue points in Premiere - the AE comp was saved out to an AVI (with metadata enabled I think).

Premiere wasn't seeing this metadata and the cue points, but Media Encoder was (and it couldn't be deleted in ME - just kept coming back).

So - moral of the story - be careful with metadata!!!

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